Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002337.1 Kokia drynarioides strain JFW-HI SEQ_114389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1370
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:709 original size:210 final size:210

Alignment explanation


    Indices: 314--719  Score: 517
    Period size: 210  Copynumber: 1.9  Consensus size: 210

        304 AGGCTTAAGT

                       **  *                   *    *        *               
        314 TTTTGAATTTACGAGGCTGCAAAAGTATGAGGAGTTTTCCTACCAAAATTGGAATGGAATCTCTA
          1 TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA

                                             *                               
        379 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCGTTCCAGAGATTGATGGGAAAATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA

                *   **       *   *                  * *     *                
        444 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC
        131 ATGTCTGTAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAATC

                           
        509 TCAGAAGACTTAAAC
        196 TCAGAAGACTTAAAC

                                      * *             *                     *
        524 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATCGGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA

               *                      *  *         *    *           *  *     
        589 GAACAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGCTTTCCGGAGATTGATGGTAAGATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA

                                            **    *       *           *      
        654 ATGTCTGCTAAGA-CTTTATTTAGATGGGACAGGCATTGAACAACTTCCCTCTTCAATTGGAAAT
        131 ATGTCTG-TAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAAT

              
        718 CT
        195 CT

        720 GAGCAATCTT


Statistics
Matches: 164,  Mismatches: 31, Indels: 2
        0.83            0.16        0.01

Matches are distributed among these distances:
 210  161  0.98
 211    3  0.02

ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Consensus pattern (210 bp):   
TTTTGAATTTAAAAGACTGCAAAAGTATGAGGAGTCTTCCAACCAAAATCGGAATGGAATCTCTA
GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCGTTCCAGAGATTGATGGGAAAATGGA
ATGTCTGTAAGAGCTTTATTTAGATGGGACAAACATTAAACAACTACCCTCTTCAATCGGAAATC
TCAGAAGACTTAAAC
Done.