Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000234.1 Kokia drynarioides strain JFW-HI SEQ_110958, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30


Found at i:1195 original size:22 final size:22

Alignment explanation


    Indices: 1151--1206  Score: 58
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1141 AAAACGAAAC

                             **    
       1151 GAAAAATGAAAGAGATGTTGAGG
          1 GAAAAA-GAAAGAGATGCAGAGG

                      *           
       1174 GAAAAAGAAATAGATGCAGAGG
          1 GAAAAAGAAAGAGATGCAGAGG

            *    *     
       1196 CAAAACGAAAG
          1 GAAAAAGAAAG

       1207 GAAATATAAA


Statistics
Matches: 27,  Mismatches: 6, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  22   21  0.78
  23    6  0.22

ACGTcount: A:0.54, C:0.05, G:0.30, T:0.11


Consensus pattern (22 bp):   
GAAAAAGAAAGAGATGCAGAGG
Done.