Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002340.1 Kokia drynarioides strain JFW-HI SEQ_114393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1996
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:1440 original size:18 final size:18

Alignment explanation


    Indices: 1417--1455  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1407 CCATAAATAC

                              
       1417 TTAATGTAAGTACTTTGA
          1 TTAATGTAAGTACTTTGA

                              
       1435 TTAATGTAAGTACTTTGA
          1 TTAATGTAAGTACTTTGA

               
       1453 TTA
          1 TTA

       1456 TCGTATCACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.33, C:0.05, G:0.15, T:0.46


Consensus pattern (18 bp):   
TTAATGTAAGTACTTTGA
Done.