Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002341.1 Kokia drynarioides strain JFW-HI SEQ_114394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7936
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:935 original size:42 final size:42

Alignment explanation


    Indices: 884--983  Score: 146
    Period size: 42  Copynumber: 2.4  Consensus size: 42

        874 CAAATATTAC

                              *     *           *      
        884 GAAACACAAACTGAAGGTTGAGAAGGGCGAAGCTGATTTAAAA
          1 GAAA-ACAAACTGAAGGTGGAGAAAGGCGAAGCTGAGTTAAAA

                                                      
        927 GAAAACAAACTGAAGGTGGAGAAAGGCGAAGCTGAGTTAAAA
          1 GAAAACAAACTGAAGGTGGAGAAAGGCGAAGCTGAGTTAAAA

                  **       
        969 GAAAACCGACTGAAG
          1 GAAAACAAACTGAAG

        984 CTAAAGCGGG


Statistics
Matches: 52,  Mismatches: 5, Indels: 1
        0.90            0.09        0.02

Matches are distributed among these distances:
  42   48  0.92
  43    4  0.08

ACGTcount: A:0.46, C:0.12, G:0.29, T:0.13


Consensus pattern (42 bp):   
GAAAACAAACTGAAGGTGGAGAAAGGCGAAGCTGAGTTAAAA
Done.