genome.fa.s2346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002346.1 Kokia drynarioides strain JFW-HI SEQ_114406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246912

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924--1973	25	2.0	25	84	4	64	62	2	4	32	1.25
9774--9828	26	2.1	26	100	0	110	34	7	18	40	1.78
12954--12997	20	2.2	19	84	12	52	56	13	0	29	1.38
13644--13737	46	2.0	45	84	8	118	43	7	7	41	1.61
17829--17939	55	2.0	55	98	0	213	47	3	12	36	1.59
18459--18869	209	2.0	209	96	0	759	33	16	16	33	1.92
19371--19435	29	2.2	29	83	0	76	29	9	27	33	1.88
19459--19670	30	7.2	29	73	14	175	37	5	23	33	1.77
19459--19670	117	1.8	117	85	2	300	37	5	23	33	1.77
19634--19878	30	8.2	29	70	18	80	35	3	24	37	1.73
19385--19747	59	6.2	58	77	7	265	35	6	25	32	1.81
19488--19878	29	13.2	30	68	13	159	36	4	23	35	1.74
19515--19848	119	2.8	120	77	8	287	36	4	23	35	1.76
19747--19886	59	2.4	60	82	8	180	35	3	23	37	1.72
21634--21675	17	2.4	19	80	15	54	47	2	2	47	1.28
21665--21713	17	2.8	18	84	3	64	63	2	2	32	1.17
21634--21737	18	6.0	17	76	9	95	55	1	2	39	1.26
21634--21737	35	3.0	34	78	9	111	55	1	2	39	1.26
21798--22096	149	2.0	149	95	0	535	20	24	18	36	1.95
22412--22808	209	1.9	209	88	2	609	22	22	18	36	1.95
50851--50951	51	2.0	51	100	0	202	39	21	11	26	1.88
57017--57079	30	2.1	30	82	5	74	38	12	7	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57046--57130	30	2.8	30	69	13	75	41	20	3	35	1.69
59728--59765	17	2.2	17	90	0	58	50	10	13	26	1.73
60173--60226	9	5.9	9	78	8	56	1	27	0	70	0.98
60171--60228	30	1.9	31	86	10	84	1	29	0	68	0.99
82643--82821	43	4.2	42	81	9	175	37	10	26	25	1.87
82643--82821	85	2.1	85	82	6	211	37	10	26	25	1.87
84303--84332	10	3.1	10	90	9	53	80	0	20	0	0.72
87696--88006	164	1.9	161	92	3	516	25	17	19	38	1.93
110705--110742	20	1.9	19	89	5	58	36	15	5	42	1.70
112376--112833	230	2.0	229	92	0	763	27	15	18	38	1.91
117229--117312	40	2.1	40	100	0	168	21	14	21	42	1.88
130924--130983	30	2.0	30	100	0	120	40	13	16	30	1.87
135347--135400	27	2.0	28	85	3	74	42	3	1	51	1.30
136420--136503	42	2.0	42	100	0	168	30	16	21	30	1.95
137538--137563	13	2.0	13	100	0	52	61	0	15	23	1.33
137658--137696	21	1.9	21	89	5	62	30	7	12	48	1.69
138198--138227	15	2.0	15	93	0	51	30	0	26	43	1.55
138608--138738	66	2.0	66	84	3	174	16	14	26	42	1.86
138821--139040	10	19.5	11	66	21	68	35	4	20	40	1.72
138820--139021	58	3.5	58	89	2	300	35	3	20	40	1.71
138928--138957	9	3.2	9	90	9	51	36	0	20	43	1.52
138928--139086	78	2.1	76	85	4	212	33	3	21	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138986--139040	20	2.8	20	88	5	76	34	3	21	40	1.71
144428--144475	12	3.4	14	80	16	55	2	33	0	64	1.05
154420--154502	34	2.4	34	90	4	105	25	10	13	50	1.73
154430--154501	34	2.2	33	92	5	126	23	9	13	52	1.70
166373--166407	15	2.4	15	90	4	54	14	14	5	65	1.44
168727--168767	19	2.2	18	95	4	73	12	14	12	60	1.58
172410--172451	17	2.5	17	88	7	59	0	23	0	76	0.79
177321--177356	15	2.5	14	86	8	54	16	25	11	47	1.79
187637--187667	14	2.2	14	100	0	62	48	19	25	6	1.72
190760--190830	26	2.7	26	91	0	106	25	14	5	54	1.61
192499--192542	14	3.1	14	78	15	54	20	20	6	52	1.69
213435--213474	17	2.4	16	87	4	53	5	15	0	80	0.88
213432--213478	18	2.8	16	81	15	58	4	19	0	76	0.95
219437--219502	33	2.0	33	96	0	123	22	27	13	36	1.92
239311--239363	27	2.0	27	96	0	97	20	13	26	39	1.89
239681--239722	14	3.1	14	79	6	50	52	7	11	28	1.64
242916--243080	81	2.0	81	95	2	296	37	24	15	22	1.93

Tables:   1

The End!