Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002358.1 Kokia drynarioides strain JFW-HI SEQ_114428, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13291
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30


Found at i:3119 original size:2 final size:2

Alignment explanation


    Indices: 3112--3177  Score: 114
    Period size: 2  Copynumber: 33.0  Consensus size: 2

       3102 CGCAAGGCAA

                                          *               *               
       3112 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AA AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                                               
       3154 AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT

       3178 GTTATTCATA


Statistics
Matches: 60,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   60  1.00

ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48


Consensus pattern (2 bp):   
AT

Done.