genome.fa.s2361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002361.1 Kokia drynarioides strain JFW-HI SEQ_114432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111071

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558--608	12	4.4	12	80	9	61	35	3	60	0	1.15
561--608	16	2.9	16	84	6	60	35	4	60	0	1.16
558--609	24	2.2	24	86	6	72	36	3	59	0	1.16
2164--2228	24	2.8	23	75	9	69	30	3	0	66	1.07
2923--2975	26	2.0	26	100	0	106	18	45	0	35	1.50
3519--3599	41	2.0	41	92	0	135	40	0	29	29	1.57
5549--5716	52	3.4	50	80	8	153	32	2	9	55	1.47
6174--6768	82	7.4	82	81	5	568	30	12	11	45	1.78
9460--9503	15	2.7	15	80	13	52	31	0	2	65	1.05
10918--11056	70	2.0	69	97	1	260	34	6	31	27	1.82
13088--13471	164	2.4	159	81	5	423	34	13	9	42	1.76
13088--13471	82	4.7	81	78	6	370	34	13	9	42	1.76
13232--13481	77	3.2	77	78	10	236	32	12	10	44	1.76
16012--16179	50	3.3	50	81	6	185	32	4	8	54	1.49
16038--16171	50	2.6	52	86	4	191	35	2	8	53	1.46
17622--17731	40	2.8	40	88	0	175	35	20	22	20	1.96
17738--17886	41	3.6	41	75	0	127	32	20	24	22	1.97
17870--17903	17	2.0	17	88	0	50	32	17	23	26	1.97
17887--18056	40	4.2	41	77	5	139	28	18	28	23	1.98
21631--21804	42	4.1	43	89	0	235	25	20	28	26	1.99
25957--26003	23	2.0	23	95	0	85	27	23	21	27	1.99
26789--26833	14	3.3	13	81	9	54	2	15	0	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26789--26837	21	2.4	21	78	21	59	4	16	0	79	0.88
26764--26865	53	2.0	50	81	9	116	5	19	2	71	1.20
31714--31763	23	2.2	23	92	0	82	24	26	22	28	1.99
31714--31770	23	2.5	23	83	11	80	26	22	24	26	2.00
33021--33065	23	2.0	23	87	8	67	35	8	8	46	1.66
34581--34644	30	2.2	28	83	10	76	39	1	57	1	1.17
34605--34644	14	2.9	14	80	0	53	40	0	60	0	0.97
35310--35651	186	1.8	186	81	5	431	27	13	11	47	1.78
37835--37924	41	2.2	41	80	4	101	41	3	25	30	1.71
45078--45102	12	2.1	12	100	0	50	40	16	8	36	1.77
48074--48145	36	2.0	36	97	0	135	31	5	43	19	1.74
48256--48297	21	2.0	21	81	9	50	33	14	21	30	1.93
49893--49943	2	25.5	2	79	0	57	47	0	49	3	1.20
65366--65408	22	1.9	23	85	4	61	44	9	2	44	1.49
66316--66357	17	2.4	17	88	4	57	47	2	28	21	1.63
66330--66377	24	2.0	24	87	0	69	47	0	33	18	1.49
69055--69080	13	2.0	13	100	0	52	53	0	15	30	1.42
72109--72238	40	3.2	39	84	10	163	39	20	18	22	1.93
72634--72669	18	2.0	18	88	0	54	69	5	5	19	1.29
76985--77035	17	3.4	17	70	30	60	19	11	31	37	1.88
76967--77040	28	2.6	28	100	0	148	22	10	31	35	1.89
78203--78232	7	4.3	7	100	0	60	30	26	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82024--82053	15	2.0	15	93	0	51	10	13	16	60	1.59
82477--82525	20	2.3	21	83	13	57	22	6	18	53	1.66
84362--84444	29	2.9	28	74	10	96	33	18	21	26	1.96
95642--95676	12	2.9	12	91	0	52	34	31	8	25	1.86

Tables:   1

The End!