Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002368.1 Kokia drynarioides strain JFW-HI SEQ_114446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2268
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32


Found at i:1721 original size:79 final size:77

Alignment explanation


    Indices: 1603--1756  Score: 220
    Period size: 79  Copynumber: 2.0  Consensus size: 77

       1593 ACTAATTTCA

                            *      *                  *   *          *       
       1603 TTTTAACTCTTGTAGGGAAGCATTAGTCATGTCTCTTCATTAGGATCTGATGTAG-TTAAAAAGC
          1 TTTTAACTCTTGTAGGAAAGCATGAGTCATGTCTCTTCATTAAGATATGATGTAGCTGAAAAAGC

                         
       1667 ATGGCAATTTCGT
         66 ATGGC-ATTTCGT

                                                                            *
       1680 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAAGATATGATGTAGCTGAAAAG
          1 TTTTAACTCTTGTAGGAAAG-C-ATGAGTCATGTCTCTTCATTAAGATATGATGTAGCTGAAAAA

                        
       1745 GCATGGCATTTC
         64 GCATGGCATTTC

       1757 TCCTTAATGA


Statistics
Matches: 68,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  77   19  0.28
  78    1  0.01
  79   36  0.53
  80   12  0.18

ACGTcount: A:0.29, C:0.15, G:0.21, T:0.36


Consensus pattern (77 bp):   
TTTTAACTCTTGTAGGAAAGCATGAGTCATGTCTCTTCATTAAGATATGATGTAGCTGAAAAAGC
ATGGCATTTCGT
Done.