Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002369.1 Kokia drynarioides strain JFW-HI SEQ_114447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2307
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33


Found at i:1855 original size:9 final size:9

Alignment explanation


    Indices: 1843--1880  Score: 51
    Period size: 9  Copynumber: 4.2  Consensus size: 9

       1833 TAGCAATTTA

                     
       1843 TTCTTCTTT
          1 TTCTTCTTT

                      
       1852 TTCTT-TTCT
          1 TTCTTCTT-T

                     
       1861 TTCTTCTTT
          1 TTCTTCTTT

                *    
       1870 TTCTCCTTT
          1 TTCTTCTTT

              
       1879 TT
          1 TT

       1881 GTTTTTCAAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
   8    2  0.08
   9   22  0.85
  10    2  0.08

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (9 bp):   
TTCTTCTTT
Done.