Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002370.1 Kokia drynarioides strain JFW-HI SEQ_114448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62484
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.32
Warning! 13 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--25 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26 GTAGTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:294 original size:34 final size:34
Alignment explanation
Indices: 251--321 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
241 AAAGTGAGCA
251 TAGAGCCTAGTGTGTCTATAAAGTATATACAACC
1 TAGAGCCTAGTGTGTCTATAAAGTATATACAACC
285 TAGAGCCTAGTGTGTCTATAAAGTATATACAACC
1 TAGAGCCTAGTGTGTCTATAAAGTATATACAACC
319 TAG
1 TAG
322 TATATTATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (34 bp):
TAGAGCCTAGTGTGTCTATAAAGTATATACAACC
Found at i:2891 original size:108 final size:108
Alignment explanation
Indices: 2750--2965 Score: 405
Period size: 108 Copynumber: 2.0 Consensus size: 108
2740 CATGATAAAC
*
2750 AATTAATTTTACTATTATAACCAAAATAGCAATTAAATTTTATAAGACTTTTTAATAGATAAATT
1 AATTAATTTTACTATTACAACCAAAATAGCAATTAAATTTTATAAGACTTTTTAATAGATAAATT
2815 TGTTGCATAATTTTTTAACTCATGTCATAGATATGACATTAAT
66 TGTTGCATAATTTTTTAACTCATGTCATAGATATGACATTAAT
* *
2858 AATTAATTTTACTATTACAACCAAAATAGCAATTAAATTTTATGAGACTTTTTAATGGATAAATT
1 AATTAATTTTACTATTACAACCAAAATAGCAATTAAATTTTATAAGACTTTTTAATAGATAAATT
2923 TGTTGCATAATTTTTTAACTCATGTCATAGATATGACATTAAT
66 TGTTGCATAATTTTTTAACTCATGTCATAGATATGACATTAAT
2966 CTAGTATATA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (108 bp):
AATTAATTTTACTATTACAACCAAAATAGCAATTAAATTTTATAAGACTTTTTAATAGATAAATT
TGTTGCATAATTTTTTAACTCATGTCATAGATATGACATTAAT
Found at i:2980 original size:15 final size:16
Alignment explanation
Indices: 2960--2995 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
2950 TAGATATGAC
2960 ATTAATCT-AGTATAT
1 ATTAATCTAAGTATAT
2975 ATTAATCTAAGTATAT
1 ATTAATCTAAGTATAT
2991 ATTAA
1 ATTAA
2996 AATTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
ATTAATCTAAGTATAT
Found at i:6399 original size:17 final size:18
Alignment explanation
Indices: 6373--6407 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
6363 ATAAAAATGG
6373 TAATAAACAGA-AACAAT
1 TAATAAACAGATAACAAT
*
6390 TAATAGACAGATAACAAT
1 TAATAAACAGATAACAAT
6408 CAATGTTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.11, G:0.09, T:0.20
Consensus pattern (18 bp):
TAATAAACAGATAACAAT
Found at i:12154 original size:65 final size:63
Alignment explanation
Indices: 12069--12193 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 63
12059 AAAAAACATC
* * * * *
12069 TAATTTCTGAAGAAACTAAAACTTAGGCTATATATATATATATGAAAAATATTTAAATGTATATA
1 TAATTTATCAAGAAACTAAAAATTA-GAT-TATATATATATATGAAAAATATTTAAAAGTATATA
* * * *
12134 TAATTTATCAAGAAATTAAAAATTAGATTATATGTATATGTGGAAAATATTTAAAAGTAT
1 TAATTTATCAAGAAACTAAAAATTAGATTATATATATATATGAAAAATATTTAAAAGTAT
12194 CGGTAAATCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 28 0.55
64 2 0.04
65 21 0.41
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (63 bp):
TAATTTATCAAGAAACTAAAAATTAGATTATATATATATATGAAAAATATTTAAAAGTATATA
Found at i:12481 original size:9 final size:9
Alignment explanation
Indices: 12467--12504 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
12457 ACTGAAATAA
12467 ATAATATAT
1 ATAATATAT
12476 ATAATATAT
1 ATAATATAT
12485 ATAATATAT
1 ATAATATAT
*
12494 AT-TTATAT
1 ATAATATAT
12502 ATA
1 ATA
12505 TCTAAGGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATAATATAT
Found at i:12842 original size:12 final size:10
Alignment explanation
Indices: 12815--12844 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
12805 TCATGGGCAG
12815 AATGTATATA
1 AATGTATATA
12825 AATGTATATA
1 AATGTATATA
*
12835 AATGTGTATA
1 AATGTATATA
12845 CATTTTAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (10 bp):
AATGTATATA
Found at i:21925 original size:20 final size:20
Alignment explanation
Indices: 21889--21927 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
21879 TTCGATCTTC
21889 ATTTTTTTATCTGTCTTTTG
1 ATTTTTTTATCTGTCTTTTG
*
21909 ATTTTCTTTA-CTTTCTTTT
1 ATTTT-TTTATCTGTCTTTT
21928 TCTGTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.10, C:0.13, G:0.05, T:0.72
Consensus pattern (20 bp):
ATTTTTTTATCTGTCTTTTG
Found at i:28352 original size:25 final size:25
Alignment explanation
Indices: 28308--28356 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
28298 TGCCCAAGTT
*
28308 TTTTATATTTAGAATTTAGTTTTTA
1 TTTTATATTTAGAATGTAGTTTTTA
28333 TTTTAT-TTTAGAAATGTAGTTTTT
1 TTTTATATTTAG-AATGTAGTTTTT
28357 TGTTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (25 bp):
TTTTATATTTAGAATGTAGTTTTTA
Found at i:30141 original size:26 final size:24
Alignment explanation
Indices: 30110--30180 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 24
30100 GTTATTAAAT
30110 TTTAATAAAATTATTATTAAATATAA
1 TTTAATAAAATTATTA--AAATATAA
*
30136 TTTAATAAAA--A-TAATATATAA
1 TTTAATAAAATTATTAAAATATAA
*
30157 TTTAATAACATTATT--AATATAA
1 TTTAATAAAATTATTAAAATATAA
30179 TT
1 TT
30181 ATTTTTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
21 16 0.41
22 8 0.21
23 3 0.08
24 2 0.05
26 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTAATAAAATTATTAAAATATAA
Found at i:30317 original size:16 final size:16
Alignment explanation
Indices: 30269--30319 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
30259 GGTTAGGATG
* *
30269 AATGGAATAGGGTTAT
1 AATGGAATAGAGTTGT
30285 AATGGAATAGAGTTGT
1 AATGGAATAGAGTTGT
*
30301 AATGGAATAGAGCTGT
1 AATGGAATAGAGTTGT
30317 AAT
1 AAT
30320 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.39, C:0.02, G:0.29, T:0.29
Consensus pattern (16 bp):
AATGGAATAGAGTTGT
Found at i:35859 original size:17 final size:17
Alignment explanation
Indices: 35837--35884 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
35827 TTAATTTAGC
35837 TAAATTAGATTT-TCAAT
1 TAAATTA-ATTTCTCAAT
*
35854 TAAATTATTTTCTCAAT
1 TAAATTAATTTCTCAAT
35871 TAAAATTTAATTTC
1 T-AAA-TTAATTTC
35885 ATTAAAGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 3 0.12
17 13 0.50
18 3 0.12
19 7 0.27
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:45057 original size:15 final size:15
Alignment explanation
Indices: 45029--45069 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
45019 AAAGGGGTGT
*
45029 AAAAAGAGATAAAAAA
1 AAAAAGA-AAAAAAAA
*
45045 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAA
45060 AAAAAGAAAA
1 AAAAAGAAAA
45070 TGTCGGGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAAAAAA
Found at i:45165 original size:18 final size:18
Alignment explanation
Indices: 45144--45181 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
45134 CAAGAAGGAG
45144 AAGAAAGACAAAGATCAC
1 AAGAAAGACAAAGATCAC
*
45162 AAGAAAGGCAAAGATCAC
1 AAGAAAGACAAAGATCAC
45180 AA
1 AA
45182 AGATGAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.61, C:0.16, G:0.18, T:0.05
Consensus pattern (18 bp):
AAGAAAGACAAAGATCAC
Found at i:45318 original size:102 final size:99
Alignment explanation
Indices: 45195--45423 Score: 314
Period size: 102 Copynumber: 2.3 Consensus size: 99
45185 TGAGAAAGAT
* *
45195 GAAGGGATGATGGATAAAATCAAGGACATGATCACGGGGGATAAAGATGACGATAAGCATAAGAA
1 GAAGGGATGATGGATAAAATCAAGGACATGATCACGGGGGATAAAGATGACGACAAGCACAAGAA
* *
45260 AGATCATGACCATAAGCACAAGGGTGAACACAAGGAG
66 AG---ATGACCATAAGCACAAGGATAAACACAAGGAG
* * *
45297 GAAGGGATGATGGATAAAATCAAGGACATGGTCACTGGTGATAAAGATGACGACAAGCACAAGAA
1 GAAGGGATGATGGATAAAATCAAGGACATGATCACGGGGGATAAAGATGACGACAAGCACAAGAA
* *
45362 AGATGAGCATAAGCACAAGGATAAACACAAGGAT
66 AGATGACCATAAGCACAAGGATAAACACAAGGAG
* * * *
45396 GAAGGGATGCTAGATAAGATCAAAGACA
1 GAAGGGATGATGGATAAAATCAAGGACA
45424 AGCTCCACGG
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 52 0.46
102 62 0.54
ACGTcount: A:0.45, C:0.13, G:0.28, T:0.14
Consensus pattern (99 bp):
GAAGGGATGATGGATAAAATCAAGGACATGATCACGGGGGATAAAGATGACGACAAGCACAAGAA
AGATGACCATAAGCACAAGGATAAACACAAGGAG
Found at i:45365 original size:21 final size:21
Alignment explanation
Indices: 45339--45380 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45329 CACTGGTGAT
45339 AAAGATGA-CGACAAGCACAAG
1 AAAGATGAGC-ACAAGCACAAG
*
45360 AAAGATGAGCATAAGCACAAG
1 AAAGATGAGCACAAGCACAAG
45381 GATAAACACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.52, C:0.17, G:0.24, T:0.07
Consensus pattern (21 bp):
AAAGATGAGCACAAGCACAAG
Found at i:45611 original size:15 final size:16
Alignment explanation
Indices: 45574--45613 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
45564 AGAGATGACG
45574 AGAAG-AAGAAAAAGA
1 AGAAGAAAGAAAAAGA
*
45589 AGAAGAAAGGAAAA-A
1 AGAAGAAAGAAAAAGA
45604 AGAAGAAAGA
1 AGAAGAAAGA
45614 CGATGGTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AGAAGAAAGAAAAAGA
Found at i:50784 original size:7 final size:7
Alignment explanation
Indices: 50774--50849 Score: 52
Period size: 7 Copynumber: 11.0 Consensus size: 7
50764 AACCCCAAAC
50774 CCTTAAA
1 CCTTAAA
50781 CCTTAAA
1 CCTTAAA
*
50788 TC-TAAA
1 CCTTAAA
50794 -CTCTAAA
1 CCT-TAAA
50801 -CTTCAAA
1 CCTT-AAA
50808 TCCTTAAA
1 -CCTTAAA
50816 CCTTAAA
1 CCTTAAA
50823 CC-TAAA
1 CCTTAAA
* *
50829 CTTTCAA
1 CCTTAAA
*
50836 CCTCAAA
1 CCTTAAA
*
50843 TCTTAAA
1 CCTTAAA
50850 TCCTAAACTC
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 1 0.02
6 10 0.18
7 38 0.69
8 3 0.05
9 3 0.05
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (7 bp):
CCTTAAA
Found at i:50813 original size:28 final size:29
Alignment explanation
Indices: 50781--50864 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 29
50771 AACCCTTAAA
50781 CCTTAAATC-TAAACTCTAAACTTCAAAT
1 CCTTAAATCTTAAACTCTAAACTTCAAAT
*
50809 CCTTAAACCTTAAAC-CTAAACTTTC-AA-
1 CCTTAAATCTTAAACTCTAAAC-TTCAAAT
*
50836 CCTCAAATCTTAAA-TCCTAAAC-TCAAAT
1 CCTTAAATCTTAAACT-CTAAACTTCAAAT
50864 C
1 C
50865 TTGAACCTCG
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
26 2 0.04
27 14 0.30
28 23 0.49
29 8 0.17
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.30
Consensus pattern (29 bp):
CCTTAAATCTTAAACTCTAAACTTCAAAT
Found at i:50843 original size:35 final size:35
Alignment explanation
Indices: 50756--50857 Score: 118
Period size: 35 Copynumber: 2.9 Consensus size: 35
50746 TCCGAACTTG
* * * *
50756 AAACTTGCAACCCCAAACCCTTAAACCTTAAATCT
1 AAACTTTCAACCTCAAATCCTTAAACCTTAAACCT
* * *
50791 AAACTCTAAACTTCAAATCCTTAAACCTTAAACCT
1 AAACTTTCAACCTCAAATCCTTAAACCTTAAACCT
50826 AAACTTTCAACCTCAAAT-CTTAAATCC-TAAAC
1 AAACTTTCAACCTCAAATCCTTAAA-CCTTAAAC
50858 TCAAATCTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
34 11 0.20
35 45 0.80
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.26
Consensus pattern (35 bp):
AAACTTTCAACCTCAAATCCTTAAACCTTAAACCT
Found at i:52133 original size:32 final size:32
Alignment explanation
Indices: 52092--52157 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
52082 ATTTTTTAAG
52092 ATTGTAAAAGAGTTGTTAAATTCATAGGTCAA
1 ATTGTAAAAGAGTTGTTAAATTCATAGGTCAA
52124 ATTGTAAAAGAGTTGTTAAATTCATAGGTCAA
1 ATTGTAAAAGAGTTGTTAAATTCATAGGTCAA
52156 AT
1 AT
52158 AATAATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (32 bp):
ATTGTAAAAGAGTTGTTAAATTCATAGGTCAA
Found at i:54881 original size:20 final size:20
Alignment explanation
Indices: 54832--54874 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
54822 ACCAGATACA
**
54832 AAACAAAACAACAATTAAAG
1 AAACAAAACAGTAATTAAAG
54852 AAACAAAACAGTAATTAAAG
1 AAACAAAACAGTAATTAAAG
54872 AAA
1 AAA
54875 TTGAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.70, C:0.12, G:0.07, T:0.12
Consensus pattern (20 bp):
AAACAAAACAGTAATTAAAG
Found at i:56558 original size:19 final size:20
Alignment explanation
Indices: 56502--56565 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
56492 ATTCGATTCT
* *
56502 AATTTTAAAAATTCA-AAGA
1 AATTTTAAAAATACATAAAA
*
56521 AATATATAAAAATACATAAAA
1 AAT-TTTAAAAATACATAAAA
*
56542 AATTTTAAAAATA-ATAATA
1 AATTTTAAAAATACATAAAA
56561 AATTT
1 AATTT
56566 AAAGAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
19 13 0.34
20 19 0.50
21 6 0.16
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (20 bp):
AATTTTAAAAATACATAAAA
Found at i:58084 original size:25 final size:24
Alignment explanation
Indices: 58038--58085 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
58028 GAGGGGATTT
** *
58038 TTATTTTATTTAATTTTCATATAA
1 TTATTTTATTTAACGTTAATATAA
58062 TTATATTTATTTAACGTTAATATA
1 TTAT-TTTATTTAACGTTAATATA
58086 GATTTTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TTATTTTATTTAACGTTAATATAA
Found at i:58139 original size:7 final size:7
Alignment explanation
Indices: 58127--58153 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
58117 TATTTATGTA
58127 TTTTTAT
1 TTTTTAT
58134 TTTTTAT
1 TTTTTAT
58141 TTTTTAT
1 TTTTTAT
58148 TTTTTA
1 TTTTTA
58154 GAAATAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:59044 original size:75 final size:76
Alignment explanation
Indices: 58953--59104 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 76
58943 GGTTTTATTG
*
58953 GAAATTGGCTATAAAAGTCATATCATCATTTTTTAC-TTTTTTTACTATTCATCATCGTCTCTCC
1 GAAATTAGCTATAAAAGTCATATCATCATTTTTTACTTTTTTTTACTATTCATCATCGTCTCTCC
59017 CTCCAAGTTAT
66 CTCCAAGTTAT
59028 GAAATTAGCTATAAAAGTCATATCATCATTTTTTACTTTTTTTTACTATTCATCATCGTCTCTCC
1 GAAATTAGCTATAAAAGTCATATCATCATTTTTTACTTTTTTTTACTATTCATCATCGTCTCTCC
59093 CTCCAAGTTAT
66 CTCCAAGTTAT
59104 G
1 G
59105 TTAAATCCCC
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 35 0.47
76 40 0.53
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (76 bp):
GAAATTAGCTATAAAAGTCATATCATCATTTTTTACTTTTTTTTACTATTCATCATCGTCTCTCC
CTCCAAGTTAT
Done.