Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002371.1 Kokia drynarioides strain JFW-HI SEQ_114450, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4421
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:50 original size:24 final size:24

Alignment explanation


    Indices: 22--104  Score: 94
    Period size: 24  Copynumber: 3.5  Consensus size: 24

         12 TAGACTAATA

                   *                
         22 AGAGTTTGACTCAAACAAATAAAC
          1 AGAGTTTAACTCAAACAAATAAAC

                     * *            
         46 AGAGTTTAATTGAAACAAATAAAC
          1 AGAGTTTAACTCAAACAAATAAAC

                  *  * *      *     
         70 AGAGTTCAATTGAAACAATTAAAC
          1 AGAGTTTAACTCAAACAAATAAAC

             *         
         94 AAAGTTTAACT
          1 AGAGTTTAACT

        105 AAAAGATTAT


Statistics
Matches: 51,  Mismatches: 8, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   51  1.00

ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25


Consensus pattern (24 bp):   
AGAGTTTAACTCAAACAAATAAAC
Done.