Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002373.1 Kokia drynarioides strain JFW-HI SEQ_114452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:1230 original size:21 final size:22

Alignment explanation


    Indices: 1199--1240  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1189 TAAGCTGATC

                                  
       1199 AAAAGTACTCGCAACTGCATCG
          1 AAAAGTACTCGCAACTGCATCG

                                 
       1221 AAAAG-ACTCGCAACTGCATC
          1 AAAAGTACTCGCAACTGCATC

       1241 TTCTACATGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  21   15  0.75
  22    5  0.25

ACGTcount: A:0.38, C:0.29, G:0.17, T:0.17


Consensus pattern (22 bp):   
AAAAGTACTCGCAACTGCATCG
Done.