Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002377.1 Kokia drynarioides strain JFW-HI SEQ_114457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6537
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32


Found at i:1615 original size:34 final size:33

Alignment explanation


    Indices: 1552--1615  Score: 83
    Period size: 34  Copynumber: 1.9  Consensus size: 33

       1542 TTAAATAACA

                      *    *        *        
       1552 TTAAAATAATTACAACTTAACAAGCAAATATAT
          1 TTAAAATAATAACAAATTAACAAGAAAATATAT

                                    *      
       1585 TTAAAATAATAACAAAATTAACAATAAAATA
          1 TTAAAATAATAAC-AAATTAACAAGAAAATA

       1616 AAAATTATAT


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  33   12  0.46
  34   14  0.54

ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28


Consensus pattern (33 bp):   
TTAAAATAATAACAAATTAACAAGAAAATATAT
Done.