Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002378.1 Kokia drynarioides strain JFW-HI SEQ_114458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19873
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:650 original size:34 final size:33

Alignment explanation


    Indices: 612--675  Score: 83
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        602 ATATAATTTT

                 *         *    *             
        612 TATTTTATTGTTAATTTTGTTATTATTTTAAATA
          1 TATTTGATTGTTAA-GTTGTAATTATTTTAAATA

                  *                       
        646 TATTTGCTTGTTAAGTTGTAATTATTTTAA
          1 TATTTGATTGTTAAGTTGTAATTATTTTAA

        676 TGTTATTTAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  33   14  0.54
  34   12  0.46

ACGTcount: A:0.28, C:0.02, G:0.09, T:0.61


Consensus pattern (33 bp):   
TATTTGATTGTTAAGTTGTAATTATTTTAAATA

Found at i:3598 original size:13 final size:13

Alignment explanation


    Indices: 3575--3609  Score: 52
    Period size: 13  Copynumber: 2.6  Consensus size: 13

       3565 TTACGTTTTC

                       *  
       3575 ATAAGTTATAATTA
          1 ATAA-TTATAAATA

                         
       3589 ATAATTATAAATA
          1 ATAATTATAAATA

                    
       3602 ATAATTAT
          1 ATAATTAT

       3610 GGAGGATTAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  13   16  0.80
  14    4  0.20

ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43


Consensus pattern (13 bp):   
ATAATTATAAATA
Done.