Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002379.1 Kokia drynarioides strain JFW-HI SEQ_114459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37


Found at i:2278 original size:43 final size:43

Alignment explanation


    Indices: 2149--2446  Score: 365
    Period size: 43  Copynumber: 7.0  Consensus size: 43

       2139 AAATCAATTG

                            *          *       * *     
       2149 ATGTATAAATGGAAGAGTCATGTCTCGGAATGAGCGTAAGATT
          1 ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGATT

                    *          *               *       
       2192 ATGTATAAGTGGAAGACTCGTGT-T-GAAATGAGCGTGAGATT
          1 ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGATT

                                                    *  
       2233 ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGGTT
          1 ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGATT

                                                *       
       2276 ATGTATAAATGGAAGACTCATGTCTCCG-AATGAGCGTGAGATT
          1 ATGTATAAATGGAAGACTCATGTCT-CGAAATGAGCATGAGATT

                               *  *      *              
       2319 ATGTATAAATGGAAGACTCGTGACTC-AGGATGAGCATGAGATT
          1 ATGTATAAATGGAAGACTCATGTCTCGA-AATGAGCATGAGATT

                                   *    *              
       2362 ATGTATAAATGGAAGACTCATGTTTCGAGATGAGCATGAGATT
          1 ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGATT

                *             *         *         *     
       2405 ATGTTTAAA-GGAAGACTTATGTCTC-AGATAGAGCATAAGATT
          1 ATGTATAAATGGAAGACTCATGTCTCGAAAT-GAGCATGAGATT

       2447 GTCTTAAAAG


Statistics
Matches: 226,  Mismatches: 22, Indels: 15
        0.86            0.08        0.06

Matches are distributed among these distances:
  41   40  0.18
  42   28  0.12
  43  155  0.69
  44    3  0.01

ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29


Consensus pattern (43 bp):   
ATGTATAAATGGAAGACTCATGTCTCGAAATGAGCATGAGATT

Done.