Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002384.1 Kokia drynarioides strain JFW-HI SEQ_114466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2219
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38


Found at i:973 original size:133 final size:133

Alignment explanation


    Indices: 730--989  Score: 466
    Period size: 133  Copynumber: 2.0  Consensus size: 133

        720 CTAGAATTTT

                                                             *               
        730 TAGTATCGGTAGATGTTACACTTGTATGGGTAGAACTATCACAAGTATCGGTAGAAGTCTGCACT
          1 TAGTATCGGTAGATGTTACACTTGTATGGGTAGAACTATCACAAGTATCAGTAGAAGTCTGCACT

                                            *                                
        795 ATTTCTAAATTGCTTACTAACTTGATTACTACCGATACTTGTCCAACAGGTATCGGTAGAAGCAT
         66 ATTTCTAAATTGCTTACTAACTTGATTACTACAGATACTTGTCCAACAGGTATCGGTAGAAGCAT

               
        860 GAC
        131 GAC

                *                                                            
        863 TAGTTTCGGTAGATGTTACACTTGTATGGGTAGAACTATCACAAGTATCAGTAGAAGTCTGCACT
          1 TAGTATCGGTAGATGTTACACTTGTATGGGTAGAACTATCACAAGTATCAGTAGAAGTCTGCACT

            *                                   *         *               
        928 GTTTCTAAATTGCTTACTAACTTGATTACTACAGATTCTTGTCCAATAGGTATCGGTAGAAG
         66 ATTTCTAAATTGCTTACTAACTTGATTACTACAGATACTTGTCCAACAGGTATCGGTAGAAG

        990 TCTTCAAAAT


Statistics
Matches: 121,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 133  121  1.00

ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Consensus pattern (133 bp):   
TAGTATCGGTAGATGTTACACTTGTATGGGTAGAACTATCACAAGTATCAGTAGAAGTCTGCACT
ATTTCTAAATTGCTTACTAACTTGATTACTACAGATACTTGTCCAACAGGTATCGGTAGAAGCAT
GAC
Done.