Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002389.1 Kokia drynarioides strain JFW-HI SEQ_114472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31


Found at i:797 original size:23 final size:22

Alignment explanation


    Indices: 766--910  Score: 128
    Period size: 23  Copynumber: 6.3  Consensus size: 22

        756 TTAGGGATAT

                                   
        766 AGTAAGCACACACAGTGCAAATC
          1 AGTAAGCACACACAGTGCAAA-C

                *     **           
        789 AGTAGGCACATGCAGTGCAAAAC
          1 AGTAAGCACACACAGTGC-AAAC

                          * *      
        812 AGTAAGCACACACACTACAAATC
          1 AGTAAGCACACACAGTGCAAA-C

                      * *      *   
        835 AGTAAGCACATATAGTGCTGAAC
          1 AGTAAGCACACACAGTGC-AAAC

                  *     *      *   
        858 AGTAAGTACACATAGTGCTGAAC
          1 AGTAAGCACACACAGTGC-AAAC

                                   
        881 AGTAAGCACACACAGTGCTAAAC
          1 AGTAAGCACACACAGTGC-AAAC

             *     
        904 ACTAAGC
          1 AGTAAGC

        911 GCGCTAATGT


Statistics
Matches: 100,  Mismatches: 19, Indels: 6
        0.80            0.15        0.05

Matches are distributed among these distances:
  22    3  0.03
  23   92  0.92
  24    5  0.05

ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16


Consensus pattern (22 bp):   
AGTAAGCACACACAGTGCAAAC

Found at i:818 original size:46 final size:46

Alignment explanation


    Indices: 766--910  Score: 166
    Period size: 46  Copynumber: 3.2  Consensus size: 46

        756 TTAGGGATAT

                                       *      *      *    
        766 AGTAAGCACACACAGTGCAAATCAGTAGGCACATGCAGTGCAAAAC
          1 AGTAAGCACACACAGTGCAAATCAGTAAGCACATACAGTGCTAAAC

                          * *                  *      *   
        812 AGTAAGCACACACACTACAAATCAGTAAGCACATATAGTGCTGAAC
          1 AGTAAGCACACACAGTGCAAATCAGTAAGCACATACAGTGCTAAAC

                  *     *      *              *            
        858 AGTAAGTACACATAGTGCTGAA-CAGTAAGCACACACAGTGCTAAAC
          1 AGTAAGCACACACAGTGC-AAATCAGTAAGCACATACAGTGCTAAAC

             *     
        904 ACTAAGC
          1 AGTAAGC

        911 GCGCTAATGT


Statistics
Matches: 81,  Mismatches: 17, Indels: 2
        0.81            0.17        0.02

Matches are distributed among these distances:
  46   79  0.98
  47    2  0.02

ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16


Consensus pattern (46 bp):   
AGTAAGCACACACAGTGCAAATCAGTAAGCACATACAGTGCTAAAC
Done.