Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002390.1 Kokia drynarioides strain JFW-HI SEQ_114474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5772
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31


Found at i:1353 original size:13 final size:14

Alignment explanation


    Indices: 1335--1367  Score: 50
    Period size: 15  Copynumber: 2.4  Consensus size: 14

       1325 AAGAATTTCA

                          
       1335 AAAGAAA-TATATC
          1 AAAGAAAGTATATC

                           
       1348 AAAGAAATGTATATC
          1 AAAGAAA-GTATATC

                 
       1363 AAAGA
          1 AAAGA

       1368 CAAGAAGCAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13    7  0.39
  15   11  0.61

ACGTcount: A:0.61, C:0.06, G:0.12, T:0.21


Consensus pattern (14 bp):   
AAAGAAAGTATATC
Done.