Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002391.1 Kokia drynarioides strain JFW-HI SEQ_114475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 908

Length: 1514
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37


Found at i:26 original size:20 final size:21

Alignment explanation


    Indices: 1--43  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

                                 
          1 TACTAAC-AACAAAATAAAAT
          1 TACTAACTAACAAAATAAAAT

                     *      *    
         21 TACTAACTAGCAAAATTAAAT
          1 TACTAACTAACAAAATAAAAT

              
         42 TA
          1 TA

         44 AAATAAATTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20    7  0.35
  21   13  0.65

ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26


Consensus pattern (21 bp):   
TACTAACTAACAAAATAAAAT

Done.