Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002392.1 Kokia drynarioides strain JFW-HI SEQ_114477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11074
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:5892 original size:109 final size:107

Alignment explanation


    Indices: 5703--5920  Score: 355
    Period size: 109  Copynumber: 2.0  Consensus size: 107

       5693 AAATCTTAAG

                         *                                                   
       5703 AAATCTGATCATAGTTGTGACTTATTCAACACTCACACCCGAATTTGAGTAACATTAATCTCAAG
          1 AAATCTGATCATAATTGTGACTTATTCAACACTCACACCCGAATTTGAGTAACATTAATCTCAAG

                            *                         
       5768 CCTACCTCAATTCTATTTTCCTCCAACTACACAATCACTTCA
         66 CCTACCTCAATTCTATATTCCTCCAACTACACAATCACTTCA

                                                *                          * 
       5810 AAATCTGATCATAATTGTGAGACTTATTCAACACTCGCACCCGAATTTGAGTAACATTAATCTTA
          1 AAATCTGATCATAATTGT--GACTTATTCAACACTCACACCCGAATTTGAGTAACATTAATCTCA

                                          *  * *        
       5875 AGCCTACCTCAATTCTATATTCCTCCAACTTCAGAGTCACTTCA
         64 AGCCTACCTCAATTCTATATTCCTCCAACTACACAATCACTTCA

              
       5919 AA
          1 AA

       5921 CATGCACAAA


Statistics
Matches: 102,  Mismatches: 7, Indels: 2
        0.92            0.06        0.02

Matches are distributed among these distances:
 107   17  0.17
 109   85  0.83

ACGTcount: A:0.33, C:0.27, G:0.09, T:0.32


Consensus pattern (107 bp):   
AAATCTGATCATAATTGTGACTTATTCAACACTCACACCCGAATTTGAGTAACATTAATCTCAAG
CCTACCTCAATTCTATATTCCTCCAACTACACAATCACTTCA
Done.