Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002395.1 Kokia drynarioides strain JFW-HI SEQ_114481, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8126
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:858 original size:27 final size:27

Alignment explanation


    Indices: 826--894  Score: 93
    Period size: 27  Copynumber: 2.6  Consensus size: 27

        816 CAAATTACCA

                     *                 
        826 CCAGTGCTATGACAAGATGGAGTTCCT
          1 CCAGTGCTACGACAAGATGGAGTTCCT

             *      *  *               
        853 CTAGTGCTGCGGCAAGATGGAGTTCCT
          1 CCAGTGCTACGACAAGATGGAGTTCCT

                      *    
        880 CCAGTGCTACCACAA
          1 CCAGTGCTACGACAA

        895 ATCGTTAATG


Statistics
Matches: 34,  Mismatches: 8, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  27   34  1.00

ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23


Consensus pattern (27 bp):   
CCAGTGCTACGACAAGATGGAGTTCCT
Done.