Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002396.1 Kokia drynarioides strain JFW-HI SEQ_114482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2978
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32


Found at i:2016 original size:27 final size:27

Alignment explanation


    Indices: 1958--2018  Score: 86
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       1948 CGATTTGTGG

                   *                  *
       1958 TAGCACTGGAGGAACTCCATCTTGCCG
          1 TAGCACTAGAGGAACTCCATCTTGCCA

            *                       *  
       1985 CAGCACTAGAGGAACTCCATCTTGTCA
          1 TAGCACTAGAGGAACTCCATCTTGCCA

                   
       2012 TAGCACT
          1 TAGCACT

       2019 GGTGGTAATT


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23


Consensus pattern (27 bp):   
TAGCACTAGAGGAACTCCATCTTGCCA
Done.