Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002404.1 Kokia drynarioides strain JFW-HI SEQ_114492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1163
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29


Found at i:59 original size:21 final size:21

Alignment explanation


    Indices: 12--60  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

          2 AATAGTGTAG

                                 
         12 ACTTCTAACGATACAAGTGTC
          1 ACTTCTAACGATACAAGTGTC

             *     *             
         33 AATTCTACCGATACAAGTGTC
          1 ACTTCTAACGATACAAGTGTC

            *      
         54 TCTTCTA
          1 ACTTCTA

         61 TAAAAACAAG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33


Consensus pattern (21 bp):   
ACTTCTAACGATACAAGTGTC
Done.