Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002405.1 Kokia drynarioides strain JFW-HI SEQ_114493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1971
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33


Found at i:730 original size:21 final size:21

Alignment explanation


    Indices: 706--753  Score: 69
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        696 CTTGTTTTTA

                                 
        706 TAGAAGAGACACTTGTATCGG
          1 TAGAAGAGACACTTGTATCGG

                 **             *
        727 TAGAATTGACACTTGTATCGT
          1 TAGAAGAGACACTTGTATCGG

                  
        748 TAGAAG
          1 TAGAAG

        754 TCTACACTAT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29


Consensus pattern (21 bp):   
TAGAAGAGACACTTGTATCGG
Done.