Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002408.1 Kokia drynarioides strain JFW-HI SEQ_114498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6926
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31


Found at i:4035 original size:19 final size:19

Alignment explanation


    Indices: 4011--4050  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       4001 CAGTTGAAAG

                               
       4011 GAGCTTCTGTATTTTCGAA
          1 GAGCTTCTGTATTTTCGAA

                               
       4030 GAGCTTCTGTATTTTCGAA
          1 GAGCTTCTGTATTTTCGAA

              
       4049 GA
          1 GA

       4051 TTGACTTAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40


Consensus pattern (19 bp):   
GAGCTTCTGTATTTTCGAA
Done.