Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002414.1 Kokia drynarioides strain JFW-HI SEQ_114511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7153
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34


Found at i:6936 original size:22 final size:23

Alignment explanation


    Indices: 6911--6954  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       6901 TAAGGAACGA

                       *           
       6911 AGAGCACCA-AGGTGCTAAATAG
          1 AGAGCACCATACGTGCTAAATAG

                   *              
       6933 AGAGCACTATACGTGCTAAATA
          1 AGAGCACCATACGTGCTAAATA

       6955 ACGAAGAGTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  22    8  0.42
  23   11  0.58

ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18


Consensus pattern (23 bp):   
AGAGCACCATACGTGCTAAATAG
Done.