Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002415.1 Kokia drynarioides strain JFW-HI SEQ_114512, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3529
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31


Found at i:2218 original size:21 final size:22

Alignment explanation


    Indices: 2194--2246  Score: 76
    Period size: 21  Copynumber: 2.5  Consensus size: 22

       2184 CTATACTAGG

                                  
       2194 AAGATAAATAAAATAAT-ATAA
          1 AAGATAAATAAAATAATAATAA

                  *               
       2215 AAGATAGAT-AAATAATAATAA
          1 AAGATAAATAAAATAATAATAA

                        
       2236 AA-ATAAATAAA
          1 AAGATAAATAAA

       2247 GATGATTAAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  20   12  0.43
  21   16  0.57

ACGTcount: A:0.72, C:0.00, G:0.06, T:0.23


Consensus pattern (22 bp):   
AAGATAAATAAAATAATAATAA

Found at i:2229 original size:20 final size:21

Alignment explanation


    Indices: 2194--2246  Score: 74
    Period size: 20  Copynumber: 2.6  Consensus size: 21

       2184 CTATACTAGG

                                  
       2194 AAGATAAATAAAATAAT-ATAA
          1 AAGATAAAT-AAATAATAATAA

                  *              
       2215 AAGATAGATAAATAATAATAA
          1 AAGATAAATAAATAATAATAA

                        
       2236 AA-ATAAATAAA
          1 AAGATAAATAAA

       2247 GATGATTAAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  20   15  0.52
  21   14  0.48

ACGTcount: A:0.72, C:0.00, G:0.06, T:0.23


Consensus pattern (21 bp):   
AAGATAAATAAATAATAATAA
Done.