genome.fa.s2419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002419.1 Kokia drynarioides strain JFW-HI SEQ_114517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62897

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7442--7537	47	2.0	49	89	6	151	43	14	17	23	1.86
10182--10208	4	6.8	4	100	0	54	25	0	48	25	1.52
15243--15283	21	2.0	21	85	9	57	26	0	2	70	0.99
15533--15619	45	1.9	45	88	0	129	48	8	0	43	1.32
16501--16559	28	2.1	28	87	0	82	50	22	6	20	1.71
17222--17255	18	1.9	18	88	5	52	35	0	0	64	0.94
18420--18484	35	1.9	35	84	6	89	46	0	1	52	1.10
18960--19000	20	2.0	21	90	4	66	14	7	4	73	1.22
20302--20364	23	2.7	23	80	7	65	65	9	0	25	1.23
20471--20500	2	15.0	2	100	0	60	50	0	0	50	1.00
21622--21661	20	2.0	20	85	9	55	32	15	17	35	1.91
21944--21997	20	2.8	20	83	5	58	42	0	0	57	0.98
26099--26156	31	1.9	30	82	10	73	48	6	15	29	1.71
28982--29039	20	2.9	20	82	10	82	62	3	0	34	1.12
36504--36528	2	12.5	2	100	0	50	52	48	0	0	1.00
41564--41605	3	14.3	3	85	5	59	69	0	30	0	0.89
41570--41611	15	2.9	15	89	3	59	69	0	30	0	0.89
42540--42685	58	2.5	57	80	7	168	33	23	11	31	1.90
42611--42793	93	2.0	92	87	5	262	37	14	10	37	1.82
42701--42882	63	2.9	61	79	4	220	34	17	12	36	1.87
43675--43812	30	4.6	30	90	0	159	60	3	7	28	1.40
43691--43812	60	2.0	60	88	0	181	59	4	7	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46146--46189	22	2.0	22	95	0	79	20	22	20	36	1.95
49636--49795	63	2.6	60	82	10	166	41	16	15	26	1.88
49712--49954	91	2.8	87	84	9	334	42	13	13	29	1.84
52266--52321	27	2.0	27	86	10	78	53	1	0	44	1.11
56415--56447	17	1.9	17	88	11	50	54	3	0	42	1.15
56413--56474	14	4.3	15	75	17	60	58	1	0	40	1.08
60856--61140	69	4.1	68	80	3	275	31	22	21	24	1.98
61093--61193	53	1.9	53	87	0	148	31	27	18	21	1.97
61038--61262	122	1.8	121	85	3	317	32	23	20	24	1.98
61148--61327	69	2.6	69	81	0	207	33	22	20	23	1.97
60950--61327	191	2.0	191	85	3	519	32	22	21	23	1.98
61423--61522	42	2.4	42	88	3	141	35	20	13	32	1.90

Tables:   1

The End!