Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002420.1 Kokia drynarioides strain JFW-HI SEQ_114518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4756
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:2242 original size:21 final size:22

Alignment explanation


    Indices: 2212--2258  Score: 60
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       2202 ACCCAAAACC

                              *   
       2212 AGCAACCTC-TCATGGAAGGCG
          1 AGCAACCTCTTCATGGAAAGCG

                 *      *         
       2233 AGCAATCTCTTCTTGGAAAGCG
          1 AGCAACCTCTTCATGGAAAGCG

                
       2255 AGCA
          1 AGCA

       2259 GCCAAGAACC


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21    8  0.36
  22   14  0.64

ACGTcount: A:0.30, C:0.26, G:0.26, T:0.19


Consensus pattern (22 bp):   
AGCAACCTCTTCATGGAAAGCG
Done.