Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002427.1 Kokia drynarioides strain JFW-HI SEQ_114531, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5459
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34


Found at i:5143 original size:21 final size:21

Alignment explanation


    Indices: 5096--5155  Score: 75
    Period size: 21  Copynumber: 2.9  Consensus size: 21

       5086 AATAGTATAG

                   *            *
       5096 ACTTCTACCGATACAAGTGAT
          1 ACTTCTATCGATACAAGTGAC

             *                   
       5117 AGTTCTATCGATACAAGTGAC
          1 ACTTCTATCGATACAAGTGAC

                    *  *      
       5138 ACTTCTATTGAAACAAGT
          1 ACTTCTATCGATACAAGT

       5156 CTTACTTCTA


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   33  1.00

ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Consensus pattern (21 bp):   
ACTTCTATCGATACAAGTGAC

Found at i:5236 original size:21 final size:21

Alignment explanation


    Indices: 5212--5263  Score: 86
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       5202 CCTACAACTT

                   **            
       5212 CTACCGATTCAAGTATTCAAA
          1 CTACCGACACAAGTATTCAAA

                                 
       5233 CTACCGACACAAGTATTCAAA
          1 CTACCGACACAAGTATTCAAA

                      
       5254 CTACCGACAC
          1 CTACCGACAC

       5264 TTCTAAACAC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21


Consensus pattern (21 bp):   
CTACCGACACAAGTATTCAAA
Done.