Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002428.1 Kokia drynarioides strain JFW-HI SEQ_114534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7463
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:1450 original size:30 final size:30

Alignment explanation


    Indices: 1396--1491  Score: 138
    Period size: 30  Copynumber: 3.2  Consensus size: 30

       1386 GATTTTAAGA

                  *      *   * *          
       1396 GCCACACGGGCTGAGCAAATGGCCATGTGC
          1 GCCACATGGGCTGGGCACACGGCCATGTGC

                      *                   
       1426 GCCACATGGGTTGGGCACACGGCCATGTGC
          1 GCCACATGGGCTGGGCACACGGCCATGTGC

                                         *
       1456 GCCACATGGGCTGGGCACACGGCCATGTGA
          1 GCCACATGGGCTGGGCACACGGCCATGTGC

                  
       1486 GCCACA
          1 GCCACA

       1492 CAACCATGCT


Statistics
Matches: 59,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   59  1.00

ACGTcount: A:0.21, C:0.31, G:0.34, T:0.14


Consensus pattern (30 bp):   
GCCACATGGGCTGGGCACACGGCCATGTGC

Found at i:3360 original size:16 final size:16

Alignment explanation


    Indices: 3339--3369  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       3329 TTCAAAACTC

                            
       3339 ATAAAAATAATATAAA
          1 ATAAAAATAATATAAA

                  *        
       3355 ATAAAATTAATATAA
          1 ATAAAAATAATATAA

       3370 CTAGTCATAG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29


Consensus pattern (16 bp):   
ATAAAAATAATATAAA
Done.