Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002431.1 Kokia drynarioides strain JFW-HI SEQ_114540, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2837
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38


Found at i:965 original size:24 final size:22

Alignment explanation


    Indices: 914--968  Score: 58
    Period size: 21  Copynumber: 2.4  Consensus size: 22

        904 AATTGATCTG

                                  
        914 ATATATTTATCATATTAATTTA
          1 ATATATTTATCATATTAATTTA

             *        *             
        936 AAATATTT-TTATATTAATATATA
          1 ATATATTTATCATATTAAT-T-TA

                      
        959 TATATATTTA
          1 -ATATATTTA

        969 ACTATTGAAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 5
        0.76            0.09        0.15

Matches are distributed among these distances:
  21    9  0.35
  22    8  0.31
  23    2  0.08
  24    7  0.27

ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55


Consensus pattern (22 bp):   
ATATATTTATCATATTAATTTA

Done.