Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002435.1 Kokia drynarioides strain JFW-HI SEQ_114545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2153
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34


Found at i:630 original size:27 final size:29

Alignment explanation


    Indices: 599--666  Score: 79
    Period size: 27  Copynumber: 2.4  Consensus size: 29

        589 ACAAAATTAA

                                  *      
        599 ATAATTAAATAATC-ATTTTATGACTTTT
          1 ATAATTAAATAATCTATTTTATAACTTTT

                  **                *    
        627 -TAATTGTATAA-CTATTTTATAATTTTT
          1 ATAATTAAATAATCTATTTTATAACTTTT

                         
        654 ATAATTAAATAAT
          1 ATAATTAAATAAT

        667 AATAAAAAAA


Statistics
Matches: 31,  Mismatches: 6, Indels: 5
        0.74            0.14        0.12

Matches are distributed among these distances:
  26    1  0.03
  27   21  0.68
  28    9  0.29

ACGTcount: A:0.41, C:0.04, G:0.03, T:0.51


Consensus pattern (29 bp):   
ATAATTAAATAATCTATTTTATAACTTTT
Done.