Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002438.1 Kokia drynarioides strain JFW-HI SEQ_114548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7272
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:3835 original size:25 final size:25

Alignment explanation


    Indices: 3785--3839  Score: 67
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       3775 TATTTAATAA

                      **        *    
       3785 TTTTATATATTTTTATTTATTAATT
          1 TTTTATATATAATTATTTATAAATT

                                      
       3810 TTTTATATATAATTATTT-TAACATT
          1 TTTTATATATAATTATTTATAA-ATT

                 
       3835 TTTTA
          1 TTTTA

       3840 ATGATTATAT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  24    2  0.08
  25   24  0.92

ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67


Consensus pattern (25 bp):   
TTTTATATATAATTATTTATAAATT

Found at i:3922 original size:18 final size:18

Alignment explanation


    Indices: 3899--3948  Score: 54
    Period size: 16  Copynumber: 2.9  Consensus size: 18

       3889 TTATAATTTT

                              
       3899 CATAATTTATAAAAATAA
          1 CATAATTTATAAAAATAA

                             * 
       3917 CATAA--TATAAAATATTA
          1 CATAATTTATAAAA-ATAA

                             
       3934 CA-AATTTA-AAAAATA
          1 CATAATTTATAAAAATA

       3949 GGTTGGGTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 8
        0.73            0.05        0.22

Matches are distributed among these distances:
  16   11  0.41
  17    9  0.33
  18    7  0.26

ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32


Consensus pattern (18 bp):   
CATAATTTATAAAAATAA
Done.