Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000244.1 Kokia drynarioides strain JFW-HI SEQ_110974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2308
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44


Found at i:2019 original size:20 final size:21

Alignment explanation


    Indices: 1996--2036  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1986 CTATTTTCCA

                   *             
       1996 GTTATTTTTACTGTT-TTTTT
          1 GTTATTTATACTGTTGTTTTT

                      *          
       2016 GTTATTTATATTGTTGTTTTT
          1 GTTATTTATACTGTTGTTTTT

       2037 CCTATTATTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20   13  0.72
  21    5  0.28

ACGTcount: A:0.12, C:0.02, G:0.12, T:0.73


Consensus pattern (21 bp):   
GTTATTTATACTGTTGTTTTT

Found at i:2252 original size:12 final size:12

Alignment explanation


    Indices: 2235--2260  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2225 AATTTGTTTA

                        
       2235 TTGTTTTAATAT
          1 TTGTTTTAATAT

                        
       2247 TTGTTTTAATAT
          1 TTGTTTTAATAT

              
       2259 TT
          1 TT

       2261 TTAAGTGTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69


Consensus pattern (12 bp):   
TTGTTTTAATAT
Done.