Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002442.1 Kokia drynarioides strain JFW-HI SEQ_114554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2346
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31


Found at i:997 original size:12 final size:11

Alignment explanation


    Indices: 980--1033  Score: 56
    Period size: 12  Copynumber: 4.7  Consensus size: 11

        970 GTGCATAACT

                        
        980 AAAATAAAATTA
          1 AAAATAAAA-TA

                     * 
        992 AAAATAAAAAA
          1 AAAATAAAATA

                        
       1003 AAAGATAAAAT-
          1 AAA-ATAAAATA

                       *
       1014 AAAATAAAATTG
          1 AAAATAAAA-TA

                    
       1026 AAAATAAA
          1 AAAATAAA

       1034 TATACTAATT


Statistics
Matches: 37,  Mismatches: 2, Indels: 6
        0.82            0.04        0.13

Matches are distributed among these distances:
  10    6  0.16
  11    8  0.22
  12   23  0.62

ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19


Consensus pattern (11 bp):   
AAAATAAAATA

Found at i:999 original size:17 final size:17

Alignment explanation


    Indices: 979--1033  Score: 67
    Period size: 17  Copynumber: 3.2  Consensus size: 17

        969 AGTGCATAAC

                             
        979 TAAAATAAAATTAAAAA
          1 TAAAATAAAATTAAAAA

                      **      
        996 TAAAA-AAAAAGATAAAA
          1 TAAAATAAAATTA-AAAA

                        *    
       1013 TAAAATAAAATTGAAAA
          1 TAAAATAAAATTAAAAA

                
       1030 TAAA
          1 TAAA

       1034 TATACTAATT


Statistics
Matches: 31,  Mismatches: 5, Indels: 4
        0.77            0.12        0.10

Matches are distributed among these distances:
  16    5  0.16
  17   22  0.71
  18    4  0.13

ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20


Consensus pattern (17 bp):   
TAAAATAAAATTAAAAA
Done.