Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000245.1 Kokia drynarioides strain JFW-HI SEQ_110976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4398
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:4028 original size:3 final size:3

Alignment explanation


    Indices: 4020--4061  Score: 68
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       4010 ACATTATTCG

                                                                    
       4020 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TCAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA

       4062 ATAACCCTAA


Statistics
Matches: 37,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   2    2  0.05
   3   33  0.89
   4    2  0.05

ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Found at i:4336 original size:16 final size:17

Alignment explanation


    Indices: 4301--4336  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       4291 TAATAAGATG

                             
       4301 TTTT-AAAAGAAAGAGA
          1 TTTTGAAAAGAAAGAGA

                             
       4317 -TTTGAAAAGAAAGA-A
          1 TTTTGAAAAGAAAGAGA

                 
       4332 TTTTG
          1 TTTTG

       4337 TAATAACAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 4
        0.82            0.00        0.18

Matches are distributed among these distances:
  15    4  0.22
  16   14  0.78

ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31


Consensus pattern (17 bp):   
TTTTGAAAAGAAAGAGA
Done.