Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002456.1 Kokia drynarioides strain JFW-HI SEQ_114576, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1466
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:1158 original size:16 final size:16

Alignment explanation


    Indices: 1137--1185  Score: 59
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1127 TGATGTGGAT

                            
       1137 ATTATTTTGATAATTA
          1 ATTATTTTGATAATTA

                    *       
       1153 ATTATTTTTAT-ATT-
          1 ATTATTTTGATAATTA

                     *      
       1167 A-TATTTTGGTAATTA
          1 ATTATTTTGATAATTA

                
       1182 ATTA
          1 ATTA

       1186 GCTAGGTTTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 6
        0.75            0.08        0.17

Matches are distributed among these distances:
  13    7  0.26
  14    4  0.15
  15    4  0.15
  16   12  0.44

ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59


Consensus pattern (16 bp):   
ATTATTTTGATAATTA
Done.