Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002463.1 Kokia drynarioides strain JFW-HI SEQ_114591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11531
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:9020 original size:55 final size:55

Alignment explanation


    Indices: 8943--9049  Score: 205
    Period size: 55  Copynumber: 1.9  Consensus size: 55

       8933 GCATTTGTAT

                          *                                        
       8943 CTCTTACATACACGGATAACTTAGATGTGATAAAGAAGGAGATAAAAATATCTAC
          1 CTCTTACATACACGAATAACTTAGATGTGATAAAGAAGGAGATAAAAATATCTAC

                                                                
       8998 CTCTTACATACACGAATAACTTAGATGTGATAAAGAAGGAGATAAAAATATC
          1 CTCTTACATACACGAATAACTTAGATGTGATAAAGAAGGAGATAAAAATATC

       9050 AAATCTATGT


Statistics
Matches: 51,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   51  1.00

ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25


Consensus pattern (55 bp):   
CTCTTACATACACGAATAACTTAGATGTGATAAAGAAGGAGATAAAAATATCTAC
Done.