Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002464.1 Kokia drynarioides strain JFW-HI SEQ_114592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:421 original size:72 final size:71

Alignment explanation


    Indices: 331--844  Score: 701
    Period size: 72  Copynumber: 7.1  Consensus size: 71

        321 ATGCAATGGG

                                *           *       *         *              
        331 AACATCTAATAAATCTGCGAGAGCTTTCTCTCAAGAATTTTCCCAATTTAGCATCGCTTCCGGAG
          1 AACATCTAATAAATCTGC-AAAGCTTTCTCTCGAGAATTTGCCCAATTTAACATCGCTTCCGGAG

                   
        396 AGGATTC
         65 AGGATTC

                                *                             *              
        403 AACATCTAATAAATCTGCGAGAGCTTTCTCTCGAGAATTTGCCCAATTTAGCATCGCTTCCGGAG
          1 AACATCTAATAAATCTGC-AAAGCTTTCTCTCGAGAATTTGCCCAATTTAACATCGCTTCCGGAG

             *     
        468 ACGATTC
         65 AGGATTC

                                             **           *                  
        475 AACATCTAATAAATCTGCAAAGGCTTTCTCTCGTTAATTTGCCCAAGTTAACATCGCTTCCGGAG
          1 AACATCTAATAAATCTGCAAA-GCTTTCTCTCGAGAATTTGCCCAATTTAACATCGCTTCCGGAG

             *     
        540 ACGATTC
         65 AGGATTC

                                                           *                 
        547 AACATCTAATAAATCTGCAACAGCTTTCTCTCTG-GAATTTGCCCAAGTTAACATCGCTTCCGGA
          1 AACATCTAATAAATCTGCAA-AGCTTTCTCTC-GAGAATTTGCCCAATTTAACATCGCTTCCGGA

              *     
        611 GACGATTC
         64 GAGGATTC

                                            * *                *             
        619 AACATCTAATAAATCTGCAAAGGCTTTCTCTCAATAATCTT-CCCAATTTAGCATCGCTTCCGGA
          1 AACATCTAATAAATCTGCAAA-GCTTTCTCTCGAGAAT-TTGCCCAATTTAACATCGCTTCCGGA

             *      
        683 GGGGATTC
         64 GAGGATTC

                                                     *     *                 
        691 AACATCTAATAAATCTGCAAGAGCTTTCTCTCTG-GAATTTTCCCAAGTTAACATCGCTTCCGGA
          1 AACATCTAATAAATCTGCAA-AGCTTTCTCTC-GAGAATTTGCCCAATTTAACATCGCTTCCGGA

             *      
        755 GTGGATTC
         64 GAGGATTC

                                       *     *                  *            
        763 AACATCTAATAAATCTGCAAAGGCTTTATCTCGCGAATTTGCCCAATTTAACGTCGCTTCCGGAG
          1 AACATCTAATAAATCTGCAAA-GCTTTCTCTCGAGAATTTGCCCAATTTAACATCGCTTCCGGAG

            *      
        828 GGGATTC
         65 AGGATTC

                      
        835 AACATCTAAT
          1 AACATCTAAT

        845 CAATTTGAAT


Statistics
Matches: 406,  Mismatches: 25, Indels: 22
        0.90            0.06        0.05

Matches are distributed among these distances:
  71    7  0.02
  72  394  0.97
  73    5  0.01

ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30


Consensus pattern (71 bp):   
AACATCTAATAAATCTGCAAAGCTTTCTCTCGAGAATTTGCCCAATTTAACATCGCTTCCGGAGA
GGATTC

Found at i:534 original size:144 final size:144

Alignment explanation


    Indices: 331--844  Score: 773
    Period size: 144  Copynumber: 3.6  Consensus size: 144

        321 ATGCAATGGG

                               *                     *         *             
        331 AACATCTAATAAATCTGC-GAGAGCTTTCTCTCAAGAATTTTCCCAATTTAGCATCGCTTCCGGA
          1 AACATCTAATAAATCTGCAAAG-GCTTTCTCTCAAGAATTTGCCCAATTTAACATCGCTTCCGGA

                                      *                            *   *     
        395 GAGGATTCAACATCTAATAAATCTGCGAGAGCTTTCTCTC-GAGAATTTGCCCAATTTAGCATCG
         65 GAGGATTCAACATCTAATAAATCTGCAAGAGCTTTCTCTCTG-GAATTTGCCCAAGTTAACATCG

                            
        459 CTTCCGGAGACGATTC
        129 CTTCCGGAGACGATTC

                                            ***           *                  
        475 AACATCTAATAAATCTGCAAAGGCTTTCTCTCGTTAATTTGCCCAAGTTAACATCGCTTCCGGAG
          1 AACATCTAATAAATCTGCAAAGGCTTTCTCTCAAGAATTTGCCCAATTTAACATCGCTTCCGGAG

             *                         *                                     
        540 ACGATTCAACATCTAATAAATCTGCAACAGCTTTCTCTCTGGAATTTGCCCAAGTTAACATCGCT
         66 AGGATTCAACATCTAATAAATCTGCAAGAGCTTTCTCTCTGGAATTTGCCCAAGTTAACATCGCT

                          
        605 TCCGGAGACGATTC
        131 TCCGGAGACGATTC

                                              *                *             
        619 AACATCTAATAAATCTGCAAAGGCTTTCTCTCAATAATCTT-CCCAATTTAGCATCGCTTCCGGA
          1 AACATCTAATAAATCTGCAAAGGCTTTCTCTCAAGAAT-TTGCCCAATTTAACATCGCTTCCGGA

             *                                              *                
        683 GGGGATTCAACATCTAATAAATCTGCAAGAGCTTTCTCTCTGGAATTTTCCCAAGTTAACATCGC
         65 GAGGATTCAACATCTAATAAATCTGCAAGAGCTTTCTCTCTGGAATTTGCCCAAGTTAACATCGC

                    **     
        748 TTCCGGAGTGGATTC
        130 TTCCGGAGACGATTC

                                       *    **                  *            
        763 AACATCTAATAAATCTGCAAAGGCTTTATCTCGCGAATTTGCCCAATTTAACGTCGCTTCCGGAG
          1 AACATCTAATAAATCTGCAAAGGCTTTCTCTCAAGAATTTGCCCAATTTAACATCGCTTCCGGAG

            *                
        828 GGGATTCAACATCTAAT
         66 AGGATTCAACATCTAAT

        845 CAATTTGAAT


Statistics
Matches: 338,  Mismatches: 28, Indels: 8
        0.90            0.07        0.02

Matches are distributed among these distances:
 143    2  0.01
 144  331  0.98
 145    5  0.01

ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30


Consensus pattern (144 bp):   
AACATCTAATAAATCTGCAAAGGCTTTCTCTCAAGAATTTGCCCAATTTAACATCGCTTCCGGAG
AGGATTCAACATCTAATAAATCTGCAAGAGCTTTCTCTCTGGAATTTGCCCAAGTTAACATCGCT
TCCGGAGACGATTC

Done.