Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000247.1 Kokia drynarioides strain JFW-HI SEQ_110979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19149
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33

Warning! 47 characters in sequence are not A, C, G, or T


Found at i:9291 original size:91 final size:91

Alignment explanation


    Indices: 9136--9316  Score: 317
    Period size: 91  Copynumber: 2.0  Consensus size: 91

       9126 AGGAAGGAAT

                       *                *                                    
       9136 ACATGCCTGTCTGGCCTTTTTATCATTTTACCAAGACCTATCAAAGTGGATAAACATGTCGATTT
          1 ACATGCCTGTCCGGCCTTTTTATCATTTAACCAAGACCTATCAAAGTGGATAAACATGTCGATTT

                                      
       9201 TTCGAAATTCTTGCTTAAAGAATGTC
         66 TTCGAAATTCTTGCTTAAAGAATGTC

                         *                  *                                
       9227 ACATGCCTGTCCGTCCTTTTTATCATTTAACCTAGACCTATCAAAGTGGATAAACATGTCGATTT
          1 ACATGCCTGTCCGGCCTTTTTATCATTTAACCAAGACCTATCAAAGTGGATAAACATGTCGATTT

              *                      
       9292 TTTGAAATTCTTGCTTAAAGAATGT
         66 TTCGAAATTCTTGCTTAAAGAATGT

       9317 TGGGTTTTGT


Statistics
Matches: 85,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  91   85  1.00

ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37


Consensus pattern (91 bp):   
ACATGCCTGTCCGGCCTTTTTATCATTTAACCAAGACCTATCAAAGTGGATAAACATGTCGATTT
TTCGAAATTCTTGCTTAAAGAATGTC

Found at i:13108 original size:4 final size:4

Alignment explanation


    Indices: 13099--13124  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

      13089 GTAAGACAGC

                                            
      13099 AAGA AAGA AAGA AAGA AAGA AAGA AA
          1 AAGA AAGA AAGA AAGA AAGA AAGA AA

      13125 AAACAGTTGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (4 bp):   
AAGA

Found at i:16724 original size:5 final size:6

Alignment explanation


    Indices: 16709--16733  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

      16699 TTAAAAAAAG

                                         
      16709 GGGGGT GGGGGT GGGGGT GGGGGT G
          1 GGGGGT GGGGGT GGGGGT GGGGGT G

      16734 ATGTTGAATA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.00, G:0.84, T:0.16


Consensus pattern (6 bp):   
GGGGGT

Done.