Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002478.1 Kokia drynarioides strain JFW-HI SEQ_114621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40


Found at i:611 original size:39 final size:39

Alignment explanation


    Indices: 557--645  Score: 160
    Period size: 39  Copynumber: 2.3  Consensus size: 39

        547 ATTCTTTTTT

                      *                    *       
        557 CAAACAATTTTGAATGTCATAAATCTGTAAGTCAAAATC
          1 CAAACAATTTCGAATGTCATAAATCTGTAAGCCAAAATC

                                                   
        596 CAAACAATTTCGAATGTCATAAATCTGTAAGCCAAAATC
          1 CAAACAATTTCGAATGTCATAAATCTGTAAGCCAAAATC

                       
        635 CAAACAATTTC
          1 CAAACAATTTC

        646 TTCTTCAATT


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  39   48  1.00

ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28


Consensus pattern (39 bp):   
CAAACAATTTCGAATGTCATAAATCTGTAAGCCAAAATC

Found at i:1286 original size:18 final size:19

Alignment explanation


    Indices: 1251--1291  Score: 50
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       1241 AAATATTTCC

                               
       1251 ATTTATATAATGTTTATA-
          1 ATTTATATAATGTTTATAT

                       *        
       1269 ATTTATAT-ATTTTGTATAT
          1 ATTTATATAATGTT-TATAT

                
       1288 ATTT
          1 ATTT

       1292 TTCTGAATTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  17    4  0.20
  18   12  0.60
  19    4  0.20

ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61


Consensus pattern (19 bp):   
ATTTATATAATGTTTATAT
Done.