Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002479.1 Kokia drynarioides strain JFW-HI SEQ_114625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42


Found at i:309 original size:20 final size:19

Alignment explanation


    Indices: 281--319  Score: 60
    Period size: 20  Copynumber: 2.0  Consensus size: 19

        271 TTTTTAATGT

                                
        281 CATACTTAATATAAATATAA
          1 CATACTTAATAT-AATATAA

                *              
        301 CATATTTAATATAATATAA
          1 CATACTTAATATAATATAA

        320 TAATGGTAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    7  0.39
  20   11  0.61

ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38


Consensus pattern (19 bp):   
CATACTTAATATAATATAA

Found at i:479 original size:28 final size:30

Alignment explanation


    Indices: 413--486  Score: 70
    Period size: 28  Copynumber: 2.6  Consensus size: 30

        403 ATTCTATTTG

                                           
        413 ATTATATTTTAATCATAATAAAAAGTAGATT
          1 ATTA-ATTTTAATCATAATAAAAAGTAGATT

                              * *     *   
        444 -TTAA-TTTAATCATAA-CATAA-TATATT
          1 ATTAATTTTAATCATAATAAAAAGTAGATT

                               
        470 ATTAATTTT-AT-ATAATA
          1 ATTAATTTTAATCATAATA

        487 TTATAATTTT


Statistics
Matches: 36,  Mismatches: 4, Indels: 10
        0.72            0.08        0.20

Matches are distributed among these distances:
  26    9  0.25
  27    9  0.25
  28   14  0.39
  29    1  0.03
  30    3  0.08

ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46


Consensus pattern (30 bp):   
ATTAATTTTAATCATAATAAAAAGTAGATT
Done.