Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000248.1 Kokia drynarioides strain JFW-HI SEQ_110983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39


Found at i:216 original size:25 final size:23

Alignment explanation


    Indices: 174--219  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 23

        164 CCAATTAGGG

                                   
        174 AATTATTGTTTAGATTTAATTCT
          1 AATTATTGTTTAGATTTAATTCT

                    *              
        197 AATTATCTTTTTAGAGTTTAATT
          1 AATTAT-TGTTTAGA-TTTAATT

        220 TTGATCCAAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    7  0.35
  25    7  0.35

ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57


Consensus pattern (23 bp):   
AATTATTGTTTAGATTTAATTCT
Done.