Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002497.1 Kokia drynarioides strain JFW-HI SEQ_114653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4694
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:1667 original size:23 final size:24

Alignment explanation


    Indices: 1640--1694  Score: 67
    Period size: 23  Copynumber: 2.3  Consensus size: 24

       1630 ACCCAAACCC

                   *                
       1640 GTTGACCGAATCGGACCATTGACT
          1 GTTGACCAAATCGGACCATTGACT

                       *   * *      
       1664 -TTGACCAAATTGGATCGTTGACT
          1 GTTGACCAAATCGGACCATTGACT

                    
       1687 GTTGACCA
          1 GTTGACCA

       1695 TTGACTTTTT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  23   19  0.73
  24    7  0.27

ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29


Consensus pattern (24 bp):   
GTTGACCAAATCGGACCATTGACT

Found at i:3643 original size:16 final size:15

Alignment explanation


    Indices: 3622--3651  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       3612 AAAAGCAAAA

                            
       3622 AAAATTTGTGTGAAAG
          1 AAAATTTGT-TGAAAG

                          
       3638 AAAATTTGTTGAAA
          1 AAAATTTGTTGAAA

       3652 ACACAACAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33


Consensus pattern (15 bp):   
AAAATTTGTTGAAAG
Done.