genome.fa.s2499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002499.1 Kokia drynarioides strain JFW-HI SEQ_114655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92794

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200--318	23	5.5	22	73	19	92	45	18	21	15	1.85
3619--3683	26	2.5	26	82	5	87	23	20	26	30	1.98
13923--13971	9	5.1	9	76	13	53	48	0	0	51	1.00
14298--14340	18	2.4	18	80	0	50	41	20	23	13	1.88
14853--14901	11	5.0	9	90	9	62	48	0	0	51	1.00
14829--14932	31	3.2	31	73	13	93	50	0	0	49	1.07
14854--14940	20	4.4	20	73	23	85	49	2	0	48	1.13
14820--14940	59	2.0	60	84	9	158	49	1	0	48	1.10
25373--25402	13	2.4	13	94	5	53	26	3	0	70	1.03
25373--25414	13	3.2	13	83	9	50	23	2	0	73	0.94
29177--29518	52	6.6	52	90	0	506	29	15	22	32	1.95
32938--32971	11	3.2	10	88	12	50	8	20	5	64	1.43
33937--33971	8	4.5	8	85	7	54	82	0	17	0	0.66
34549--34624	30	2.6	30	81	8	86	35	21	3	39	1.72
34569--34624	30	1.9	30	89	7	89	35	23	3	37	1.72
34609--34684	30	2.6	30	87	4	111	36	26	1	35	1.65
34609--34707	30	3.4	30	83	9	100	37	24	1	37	1.62
56023--56827	148	5.4	147	88	4	1107	45	9	3	41	1.55
57260--57314	3	19.0	3	85	7	69	67	0	3	29	1.08
57260--57298	11	3.5	11	93	6	69	74	0	0	25	0.82
57253--57298	23	2.1	22	85	14	69	76	0	0	23	0.79
57691--58172	42	11.5	42	88	0	678	37	24	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58567--58635	34	2.1	33	84	13	88	5	14	1	78	1.01
58578--58620	19	2.3	18	81	14	52	4	11	0	83	0.78
71950--71992	4	10.8	4	94	0	50	41	0	34	23	1.55
75583--75622	20	2.0	20	85	0	53	32	12	0	55	1.38
76533--77290	147	5.2	147	86	4	1048	43	10	3	42	1.55
76533--77290	295	2.6	294	88	3	1118	43	10	3	42	1.55
76533--77384	295	2.9	284	84	7	952	44	9	3	42	1.56
77645--77678	12	2.6	14	86	13	54	17	0	11	70	1.16
81570--81603	16	2.2	16	94	5	61	38	8	35	17	1.81
81891--81936	25	1.9	25	86	8	69	32	4	6	56	1.45
85103--85146	11	3.9	11	80	16	54	18	4	0	77	0.94
85103--85146	6	7.7	6	89	5	56	18	4	0	77	0.94
86093--86134	18	2.3	18	91	4	66	73	0	14	11	1.09
87185--87230	25	1.9	25	86	8	69	32	4	6	56	1.45
92510--92552	19	2.3	19	84	8	52	58	4	0	37	1.19
92764--92794	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!