Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002502.1 Kokia drynarioides strain JFW-HI SEQ_114660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2784
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37


Found at i:1294 original size:41 final size:40

Alignment explanation


    Indices: 1230--1326  Score: 104
    Period size: 41  Copynumber: 2.3  Consensus size: 40

       1220 GTAAATATAT

                                     ***               
       1230 TTTACTTTATATATATTAAAGAGATGGTTTTTTAATTTATAAA
          1 TTTAC-TT-TATATATTAAAGAGATAAATTTTTAATTT-TAAA

                           *                     *  
       1273 TTTACTTTATATATTCAAGAGATAAATTTTTAATTTTTAA
          1 TTTACTTTATATATTAAAGAGATAAATTTTTAATTTTAAA

                 *        
       1313 TTTATTTTTATATA
          1 TTTA-CTTTATATA

       1327 ATTTTAAAAG


Statistics
Matches: 47,  Mismatches: 6, Indels: 4
        0.82            0.11        0.07

Matches are distributed among these distances:
  40    7  0.15
  41   33  0.70
  42    2  0.04
  43    5  0.11

ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55


Consensus pattern (40 bp):   
TTTACTTTATATATTAAAGAGATAAATTTTTAATTTTAAA
Done.