Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002504.1 Kokia drynarioides strain JFW-HI SEQ_114662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37


Found at i:314 original size:47 final size:47

Alignment explanation


    Indices: 251--366  Score: 153
    Period size: 47  Copynumber: 2.4  Consensus size: 47

        241 TTTTAAATAA

                  *    *                                   
        251 TAATGGGTATTGTGTTTAATGAGTTTGGGTTTAACAATATTAAATTT
          1 TAATGGATATTATGTTTAATGAGTTTGGGTTTAACAATATTAAATTT

                                 *           *         *   
        298 TAATGGATATTATGTTTAATGGGTTTGGGTTTAGCAATATTAAGTTT
          1 TAATGGATATTATGTTTAATGAGTTTGGGTTTAACAATATTAAATTT

                        *          
        345 TAATAGGCATATGA-GTTTAATG
          1 TAAT-GG-ATATTATGTTTAATG

        367 TTTAAATTTG


Statistics
Matches: 61,  Mismatches: 6, Indels: 3
        0.87            0.09        0.04

Matches are distributed among these distances:
  47   46  0.75
  48   10  0.16
  49    5  0.08

ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45


Consensus pattern (47 bp):   
TAATGGATATTATGTTTAATGAGTTTGGGTTTAACAATATTAAATTT
Done.