Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002506.1 Kokia drynarioides strain JFW-HI SEQ_114664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 725

Length: 1209
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27


Found at i:383 original size:216 final size:216

Alignment explanation


    Indices: 10--1209  Score: 1575
    Period size: 216  Copynumber: 5.6  Consensus size: 216

          1 AATATTTAG

                               **                  *   *         *    *      
         10 AAAATTGCTCGAAA-GAATATATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAG
          1 AAAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTAG

                             *        *         *               * *  *       
         74 TAAAAGTTTGACAAGTTTGAAAGTTCCTCCAAGAACGAAGAGAGAAACAATTATGACATAAATAA
         65 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA

                          * *                                *    *     *    
        139 GTTTTTAATTCAAATAACAAAACTTGTATACAAAATGACAAACTATTTACACCACATGATGCGAT
        130 GTTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGAT

                 *               *
        204 TTCCTAAGGATGGAATGTTCGG
        195 TTCCTGAGGATGGAATGTTCGA

                                   * *                  *              *  *  
        226 AAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATATCTCGT
          1 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTAGT

                        *     *                                              
        291 AAAAGTTTGACAGGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
         66 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG

                                                                             
        356 TTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGATT
        131 TTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGATT

                *    *           
        421 TCCTAAGGAAGGAATGTTCGA
        196 TCCTGAGGATGGAATGTTCGA

                                   *    *               *                 *  
        442 AAAATTGCTCAAAGGAATGGATCTTCTTCAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGT
          1 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTAGT

                            * *     *                                        
        507 AAAAGTTTGACAAGTTTGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
         66 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG

                        *             * *     *                              
        572 TTTTTAATTCAACGACCAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATT
        131 TTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGATT

              *     *       *     
        637 T-GTCGAGCATGGAATATTCGA
        196 TCCT-GAGGATGGAATGTTCGA

                     *                  *         *   *              *       
        658 AAAATTGCTAAAAGGAATGGATCGTCTTAAATACTTTAAGGATCCGAAGTTAAAAAAGAA-TAAG
          1 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACT-AG

                                      *  *        *   *      *   *           
        722 TAAAAGTTTGACAAGTTCGAAAGTTCATCAAAGAACAAGGAGGGAAACAGTTCCCACGTAAATAA
         65 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA

                                       *                  *                  
        787 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATATAGACCAAATGATACGAT
        130 GTTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGAT

                     *             
        852 TTCGC-GAGCATGGAATGTTCGA
        195 TTC-CTGAGGATGGAATGTTCGA

                    *                                   *         **   *    *
        874 AAAATTGCGCGAAA-GAATGGATCGTCTTGAATACTTT-GAGGATCCGAAGTTATCAAAGAACTT
          1 AAAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAG-GGAACCGAAGTTAAAAAATAACTA

                                       *                                     
        937 GTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
         64 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA

             *    *             *                                        *   
       1002 ACTTTTCAATTCAAAGACCAGAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATGCGA
        129 AGTTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGA

                 *      **         
       1067 TTTCCCGAGGATTAAATGTTCGA
        194 TTTCCTGAGGATGGAATGTTCGA

                                   *      *            **   *             *  
       1090 AAAATTGCTCAAAGGAATGGATCTTCTTGATTACTTTAGGGAATAGAATTTAAAAAATAACTTGT
          1 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTAGT

                            * **  *                      *         
       1155 AAAAGTTTGACAAGTTTGGGAGCTCGTCCAAGAACAAAGAGAGAAGCAATTCTCA
         66 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCA


Statistics
Matches: 872,  Mismatches: 101, Indels: 22
        0.88            0.10        0.02

Matches are distributed among these distances:
 215    9  0.01
 216  858  0.98
 217    5  0.01

ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27


Consensus pattern (216 bp):   
AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTAGT
AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATACGATT
TCCTGAGGATGGAATGTTCGA

Done.