Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002509.1 Kokia drynarioides strain JFW-HI SEQ_114669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Found at i:473 original size:14 final size:14

Alignment explanation


    Indices: 450--484  Score: 52
    Period size: 14  Copynumber: 2.5  Consensus size: 14

        440 TTAATCAAAT

                 *        
        450 AATTTCATAAAAAA
          1 AATTTAATAAAAAA

                        * 
        464 AATTTAATAAAATA
          1 AATTTAATAAAAAA

                   
        478 AATTTAA
          1 AATTTAA

        485 GTTTGTGGTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34


Consensus pattern (14 bp):   
AATTTAATAAAAAA
Done.